1 HisKA_3#1
210-271 aa · 62 aa · 14.5% of protein
Raw token
HisKA_3:210:0.00000000000117:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI010_RS01660
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_017378625
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017378625#BLI010_RS01660Stable P2CS identifier used across views.
GenomeGCF_017378625Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 429 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.000000000448:414:98:109- Raw architecture: HisKA_3:210:0.00000000000117:271:65:68#HATPase_c:330:0.000000000448:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017378625::NZ_CP071733.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span336530-338495Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI010_01660RefSeq proteinWP_206648397.1
Context group ID
GCF_017378625::NZ_CP071733.1::G00005Context members
BLI010_RS01655BLI010_RS01660
Partner locus tags
BLI010_RS01655BLI010_RS01660
Partner old locus tags
BLI010_01655BLI010_01660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_206648397.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX1LIG4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX1LIG4_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI010_RS01660Primary locus identifier stored in the genes table.
Old locus tagBLI010_01660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071733.1Sequence record reported by the local genomic context database.
Genomic interval337 206-338 495 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span336 530-338 495 ntGCF_017378625::NZ_CP071733.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017378625::NZ_CP071733.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071733.1All displayed genes belong to this local TCS context.
Neighborhood span336 530-338 495 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
336 530 nt338 495 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLI010_RS01655GCF_017378625#BLI010_RS01655
RRNarL
336 530-337 213 nt · Reverse (-)
BLI010_RS01660GCF_017378625#BLI010_RS01660
HKClassicCurrent focus
337 206-338 495 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017299595#BLI009_RS07815Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2183609
Simplified PFAM architecture for HKOC_2183609
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2183609
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_017299595#BLI009_RS07815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_017378625
AssemblyASM1737862v1 · Complete Genomehaploid
Genome composition2 656 240 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 34 · HK 12 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key