1 HAMP#1
57-127 aa · 71 aa · 19.9% of protein
Raw token
HAMP:57:3.96e-18:127:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI011_RS10260
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_017357365
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017357365#BLI011_RS10260Stable P2CS identifier used across views.
GenomeGCF_017357365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 357 aa (69.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.00000000000000114:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.1% of protein
Raw token
HATPase_c:240:3.58e-21:350:112:109- Raw architecture: HAMP:57:3.96e-18:127:71:69#HisKA:131:0.00000000000000114:195:65:64#HATPase_c:240:3.58e-21:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017357365::NZ_CP071685.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2307676-2309471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI011_10260RefSeq proteinWP_012578061.1
Context group ID
GCF_017357365::NZ_CP071685.1::G00019Context members
BLI011_RS10255BLI011_RS10260
Partner locus tags
BLI011_RS10255BLI011_RS10260
Partner old locus tags
BLI011_10255BLI011_10260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012578061.1Primary protein accession used for annex mappings.
UniProt accessionB7GT08Primary UniProt accession resolved in the annex database.
UniProt IDB7GT08_BIFLSDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI011_RS10260Primary locus identifier stored in the genes table.
Old locus tagBLI011_10260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071685.1Sequence record reported by the local genomic context database.
Genomic interval2 308 398-2 309 471 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 307 676-2 309 471 ntGCF_017357365::NZ_CP071685.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017357365::NZ_CP071685.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071685.1All displayed genes belong to this local TCS context.
Neighborhood span2 307 676-2 309 471 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 307 676 nt2 309 471 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLI011_RS10255GCF_017357365#BLI011_RS10255
RROmpR
2 307 676-2 308 398 nt · Forward (+)
BLI011_RS10260GCF_017357365#BLI011_RS10260
HKClassicCurrent focus
2 308 398-2 309 471 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS09150Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765026
Simplified PFAM architecture for HKOC_2765026
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2765026
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS09150
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 59 total members. Page 1 / 2.
GCF_000020425#BLON_RS09150 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_017357365
AssemblyASM1735736v1 · Chromosomehaploid
Genome composition2 685 668 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 34 · HK 12 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key