1 Response_reg#1
13-128 aa · 116 aa · 52.3% of protein
Raw token
Response_reg:13:1.07e-16:128:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI011_RS03615
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_017357365
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017357365#BLI011_RS03615Stable P2CS identifier used across views.
GenomeGCF_017357365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 222 aa (76.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-211 aa · 53 aa · 23.9% of protein
Raw token
HTH_LUXR:159:8.8e-17:211:53:58- Raw architecture: Response_reg:13:1.07e-16:128:116:111#HTH_LUXR:159:8.8e-17:211:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017357365::NZ_CP071685.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span867350-868018Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI011_03615RefSeq proteinWP_065435780.1
Context group ID
GCF_017357365::NZ_CP071685.1::G00003Context members
BLI011_RS03615
Partner locus tags
BLI011_RS03615
Partner old locus tags
BLI011_03615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065435780.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX1LM21Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX1LM21_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI011_RS03615Primary locus identifier stored in the genes table.
Old locus tagBLI011_03615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071685.1Sequence record reported by the local genomic context database.
Genomic interval867 350-868 018 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span867 350-868 018 ntGCF_017357365::NZ_CP071685.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017357365::NZ_CP071685.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071685.1All displayed genes belong to this local TCS context.
Neighborhood span867 350-868 018 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
867 350 nt868 018 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLI011_RS03615GCF_017357365#BLI011_RS03615
RRNarLCurrent focus
867 350-868 018 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686105#BAD15_RS01955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1643104
Simplified PFAM architecture for RROC_1643104
PFAM domain coverage: 168 / 222 aa (75.7%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-128] | GerE[161-212]
- Domain count: 2
- Matched identifier: RROC_1643104
- Positioned domains: Response_reg 13-128 ; Response_reg 13-128 ; GerE 161-212 ; GerE 161-212
Cluster members and taxonomy
Representative gene: GCF_001686105#BAD15_RS01955
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 8 over 8 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_017357365
AssemblyASM1735736v1 · Chromosomehaploid
Genome composition2 685 668 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 34 · HK 12 · RR 20CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key