1 Response_reg#1
44-130 aa · 87 aa · 37.7% of protein
Raw token
Response_reg:44:0.00000000000011:130:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J3464_RS08275
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_017312685
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017312685#J3464_RS08275Stable P2CS identifier used across views.
GenomeGCF_017312685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 231 aa (62.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-224 aa · 57 aa · 24.7% of protein
Raw token
HTH_LUXR:168:3.78e-16:224:57:58- Raw architecture: Response_reg:44:0.00000000000011:130:87:111#HTH_LUXR:168:3.78e-16:224:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017312685::NZ_BNHF01000018.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44421-45116Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC00353_16110RefSeq proteinWP_206874071.1
Context group ID
GCF_017312685::NZ_BNHF01000018.1::G00009Context members
J3464_RS08275
Partner locus tags
J3464_RS08275
Partner old locus tags
MCC00353_16110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_206874071.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ3464_RS08275Primary locus identifier stored in the genes table.
Old locus tagMCC00353_16110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BNHF01000018.1Sequence record reported by the local genomic context database.
Genomic interval44 421-45 116 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 421-45 116 ntGCF_017312685::NZ_BNHF01000018.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017312685::NZ_BNHF01000018.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BNHF01000018.1All displayed genes belong to this local TCS context.
Neighborhood span44 421-45 116 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 421 nt45 116 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J3464_RS08275GCF_017312685#J3464_RS08275
RRNarLCurrent focus
44 421-45 116 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017312685#J3464_RS08275The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1176332
Simplified PFAM architecture for RROC_1176332
PFAM domain coverage: 166 / 231 aa (71.9%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-129] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1176332
- Positioned domains: Response_reg 17-129 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_017312685#J3464_RS08275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_017312685
AssemblyASM1731268v1 · Contighaploid
Genome composition2 388 394 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 9 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key