1 HisKA_3#1
225-288 aa · 64 aa · 13.9% of protein
Raw token
HisKA_3:225:0.0000000000000184:288:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J3469_RS02040
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_017312625
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017312625#J3469_RS02040Stable P2CS identifier used across views.
GenomeGCF_017312625Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 460 aa (39.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
335-453 aa · 119 aa · 25.9% of protein
Raw token
HATPase_c:335:0.0000000925:453:120:109- Raw architecture: HisKA_3:225:0.0000000000000184:288:64:68#HATPase_c:335:0.0000000925:453:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017312625::NZ_BNHC01000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99027-101062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC00316_04050RefSeq proteinWP_207122174.1
Context group ID
GCF_017312625::NZ_BNHC01000002.1::G00003Context members
J3469_RS02040J3469_RS02045
Partner locus tags
J3469_RS02040J3469_RS02045
Partner old locus tags
MCC00316_04050MCC00316_04060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_207122174.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV4L2R6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV4L2R6_BIFLLDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ3469_RS02040Primary locus identifier stored in the genes table.
Old locus tagMCC00316_04050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BNHC01000002.1Sequence record reported by the local genomic context database.
Genomic interval99 027-100 409 nt1 383 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span99 027-101 062 ntGCF_017312625::NZ_BNHC01000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017312625::NZ_BNHC01000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BNHC01000002.1All displayed genes belong to this local TCS context.
Neighborhood span99 027-101 062 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 027 nt101 062 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J3469_RS02040GCF_017312625#J3469_RS02040
HKClassicCurrent focus
99 027-100 409 nt · Forward (+)
J3469_RS02045GCF_017312625#J3469_RS02045
RRNarL
100 409-101 062 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017312625#J3469_RS02040The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1838927
Simplified PFAM architecture for HKOC_1838927
PFAM domain coverage: 66 / 460 aa (14.3%)
1 aa460 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[225-290]
- Domain count: 1
- Matched identifier: HKOC_1838927
- Positioned domains: HisKA_3 225-290
Cluster members and taxonomy
Representative gene: GCF_017312625#J3469_RS02040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_017312625
AssemblyASM1731262v1 · Contighaploid
Genome composition2 382 226 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key