1 HisKA#1
245-309 aa · 65 aa · 14.5% of protein
Raw token
HisKA:245:0.00000000000142:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JQS07_RS04170
Histidine kinase, Classic
Clostridioides difficile · GCF_017310685
ClassHKTypeClassicLength447 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017310685#JQS07_RS04170Stable P2CS identifier used across views.
GenomeGCF_017310685Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 447 aa (34.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa447 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
357-444 aa · 88 aa · 19.7% of protein
Raw token
HATPase_c:357:0.00000000000167:444:89:109- Raw architecture: HisKA:245:0.00000000000142:309:65:64#HATPase_c:357:0.00000000000167:444:89:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017310685::NZ_JAFBLU010000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81255-83350Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_017310685::NZ_JAFBLU010000003.1::G00030Context members
JQS07_RS04165JQS07_RS04170
Partner locus tags
JQS07_RS04165JQS07_RS04170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236872490.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJQS07_RS04170Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAFBLU010000003.1Sequence record reported by the local genomic context database.
Genomic interval82 007-83 350 nt1 344 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 255-83 350 ntGCF_017310685::NZ_JAFBLU010000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017310685::NZ_JAFBLU010000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFBLU010000003.1All displayed genes belong to this local TCS context.
Neighborhood span81 255-83 350 nt2 096 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 255 nt83 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JQS07_RS04165GCF_017310685#JQS07_RS04165
RROmpR
81 255-81 962 nt · Forward (+)
JQS07_RS04170GCF_017310685#JQS07_RS04170
HKClassicCurrent focus
82 007-83 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017310685#JQS07_RS04170The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2004207
Simplified PFAM architecture for HKOC_2004207
PFAM domain coverage: 153 / 447 aa (34.2%)
1 aa447 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-444]
- Domain count: 2
- Matched identifier: HKOC_2004207
- Positioned domains: HisKA 245-310 ; HATPase_c 358-444
Cluster members and taxonomy
Representative gene: GCF_017310685#JQS07_RS04170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_017310685
AssemblyASM1731068v1 · Contighaploid
Genome composition4 203 963 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key