Gene detail

JQ684_RS00735

Histidine kinase, Classic

Francisella tularensis subsp. holarctica · GCF_017089055

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_017089055#JQ684_RS00735Stable P2CS identifier used across views.

GenomeGCF_017089055Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella

Selected clusterHKOC_1664358Run 6 · 41 sequences · id 100% · cov 80%

External referencesWP_011648783.1 · MIST4 JQ684_RS00735RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length475 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage167 / 475 aa (35.2%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.

Biotite-like domain view for JQ684_RS00735

Domain-by-domain annotation2 items

1 HisKA#1

252-312 aa · 61 aa · 12.8% of protein

Raw tokenHisKA:252:0.0000000000000944:312:61:64

2 HATPase_c#2

365-470 aa · 106 aa · 22.3% of protein

Raw tokenHATPase_c:365:3.24e-29:470:106:109

Raw architecture: HisKA:252:0.0000000000000944:312:61:64#HATPase_c:365:3.24e-29:470:106:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_017089055::NZ_JAFCQZ010000002.1::G00001

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span51813-53240Genomic interval covered by the local TCS group.

Identifiers

Old locus tagJQ684_00740RefSeq proteinWP_011648783.1

Context group IDGCF_017089055::NZ_JAFCQZ010000002.1::G00001

Context members

JQ684_RS00735

Partner locus tags

JQ684_RS00735

Partner old locus tags

JQ684_00740

Partner protein IDs

WP_011648783.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_011648783.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagJQ684_RS00735Primary locus identifier stored in the genes table.

Old locus tagJQ684_00740Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_JAFCQZ010000002.1Sequence record reported by the local genomic context database.

Genomic interval51 813-53 240 nt1 428 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span51 813-53 240 ntGCF_017089055::NZ_JAFCQZ010000002.1::G00001

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_017089055::NZ_JAFCQZ010000002.1::G00001

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_JAFCQZ010000002.1All displayed genes belong to this local TCS context.

Neighborhood span51 813-53 240 nt1 428 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

51 813 nt53 240 nt

+-JQ684_RS00735

Neighborhood gene cards

1 gene in the current local neighborhood.

JQ684_RS00735GCF_017089055#JQ684_RS00735

HKClassicCurrent focus

51 813-53 240 nt · Reverse (-)

Old locus JQ684_00740RefSeq WP_011648783.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1664358HK

Run 641 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Representative GCF_000011405#AYI_RS08970

Selected clusterHKOC_1664358Run 6 · HK · 41 sequences

Representative sequenceGCF_000011405#AYI_RS08970Use this link to inspect the representative gene detail.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_1664358

Simplified PFAM architecture for HKOC_1664358

PFAM domain coverage: 168 / 475 aa (35.4%)

1 aa475 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[251-313] | HATPase_c[365-469]
Domain count: 2
Matched identifier: HKOC_1664358
Positioned domains: HisKA 251-313 ; HATPase_c 365-469

Cluster members and taxonomy

Representative gene: GCF_000011405#AYI_RS08970

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 119 857 · GCF_017089055

AssemblyASM1708905v1 · Contighaploid

Genome composition1 789 065 bp · 32,0% GCFrancisella tularensis subsp. holarctica

Signal transduction countsGenes 2 · HK 1 · RR 1CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key