1 Response_reg#1
7-117 aa · 111 aa · 47.4% of protein
Raw token
Response_reg:7:2.28e-34:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW46_RS12425
Response regulator OmpR family
Clostridioides difficile · GCF_016767135
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767135#JMW46_RS12425Stable P2CS identifier used across views.
GenomeGCF_016767135Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:155:2.19e-26:231:77:77- Raw architecture: Response_reg:7:2.28e-34:117:111:111#Trans_reg_C:155:2.19e-26:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767135::NZ_CP068553.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2708215-2710517Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW46_12425RefSeq proteinWP_003417859.1
Context group ID
GCF_016767135::NZ_CP068553.1::G00034Context members
JMW46_RS12420JMW46_RS12425
Partner locus tags
JMW46_RS12420JMW46_RS12425
Partner old locus tags
JMW46_12420JMW46_12425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417859.1Primary protein accession used for annex mappings.
UniProt accessionD5Q0B0Primary UniProt accession resolved in the annex database.
UniProt IDD5Q0B0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW46_RS12425Primary locus identifier stored in the genes table.
Old locus tagJMW46_12425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068553.1Sequence record reported by the local genomic context database.
Genomic interval2 709 813-2 710 517 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 708 215-2 710 517 ntGCF_016767135::NZ_CP068553.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767135::NZ_CP068553.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068553.1All displayed genes belong to this local TCS context.
Neighborhood span2 708 215-2 710 517 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 708 215 nt2 710 517 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW46_RS12420GCF_016767135#JMW46_RS12420
HKClassic
2 708 215-2 709 822 nt · Forward (+)
JMW46_RS12425GCF_016767135#JMW46_RS12425
RROmpRCurrent focus
2 709 813-2 710 517 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047422
Simplified PFAM architecture for RROC_1047422
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-117] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1047422
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767135
AssemblyASM1676713v1 · Complete Genomehaploid
Genome composition4 070 623 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key