1 Response_reg#1
6-115 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:6:3.21e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW47_RS16630
Response regulator OmpR family
Clostridioides difficile · GCF_016767115
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767115#JMW47_RS16630Stable P2CS identifier used across views.
GenomeGCF_016767115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 240 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-235 aa · 76 aa · 31.7% of protein
Raw token
Trans_reg_C:160:2.18e-30:235:77:77- Raw architecture: Response_reg:6:3.21e-33:115:111:111#Trans_reg_C:160:2.18e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767115::NZ_CP068552.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3639488-3642512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW47_16630RefSeq proteinWP_009905981.1
Context group ID
GCF_016767115::NZ_CP068552.1::G00050Context members
JMW47_RS16630JMW47_RS16635
Partner locus tags
JMW47_RS16630JMW47_RS16635
Partner old locus tags
JMW47_16630JMW47_16635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009905981.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GZ40Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GZ40_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW47_RS16630Primary locus identifier stored in the genes table.
Old locus tagJMW47_16630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068552.1Sequence record reported by the local genomic context database.
Genomic interval3 639 488-3 640 210 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 639 488-3 642 512 ntGCF_016767115::NZ_CP068552.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767115::NZ_CP068552.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068552.1All displayed genes belong to this local TCS context.
Neighborhood span3 639 488-3 642 512 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 639 488 nt3 642 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW47_RS16630GCF_016767115#JMW47_RS16630
RROmpRCurrent focus
3 639 488-3 640 210 nt · Forward (+)
JMW47_RS16635GCF_016767115#JMW47_RS16635
HKClassic
3 640 176-3 642 512 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0212655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882192
Simplified PFAM architecture for RROC_0882192
PFAM domain coverage: 184 / 240 aa (76.7%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[160-234]
- Domain count: 2
- Matched identifier: RROC_0882192
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 160-234 ; Trans_reg_C 160-234
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0212655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767115
AssemblyASM1676711v1 · Complete Genomehaploid
Genome composition4 065 486 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key