1 Response_reg#1
5-69 aa · 65 aa · 85.5% of protein
Raw token
Response_reg:5:0.000000000000403:69:65:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW48_RS19370
Response regulator, CheY family
Clostridioides difficile · GCF_016767095
ClassRRTypeCheYLength76 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767095#JMW48_RS19370Stable P2CS identifier used across views.
GenomeGCF_016767095Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length76 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage65 / 76 aa (85.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa76 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.000000000000403:69:65:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767095::NZ_CP068556.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4100188-4102037Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_016767095::NZ_CP068556.1::G00055Context members
JMW48_RS18760JMW48_RS19370
Partner locus tags
JMW48_RS18760JMW48_RS19370
Partner old locus tags
JMW48_18760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235689819.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW48_RS19370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP068556.1Sequence record reported by the local genomic context database.
Genomic interval4 101 807-4 102 037 nt231 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 100 188-4 102 037 ntGCF_016767095::NZ_CP068556.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767095::NZ_CP068556.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068556.1All displayed genes belong to this local TCS context.
Neighborhood span4 100 188-4 102 037 nt1 850 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 100 188 nt4 102 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW48_RS18760GCF_016767095#JMW48_RS18760
HKClassic
4 100 188-4 101 693 nt · Forward (+)
JMW48_RS19370GCF_016767095#JMW48_RS19370
RRCheYCurrent focus
4 101 807-4 102 037 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016767095#JMW48_RS19370The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2477074
Simplified PFAM architecture for RROC_2477074
PFAM domain coverage: 64 / 76 aa (84.2%)
1 aa76 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-68]
- Domain count: 1
- Matched identifier: RROC_2477074
- Positioned domains: Response_reg 5-68
Cluster members and taxonomy
Representative gene: GCF_016767095#JMW48_RS19370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767095
AssemblyASM1676709v1 · Complete Genomehaploid
Genome composition4 184 560 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 49 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key