1 HisKA#1
95-142 aa · 48 aa · 15.7% of protein
Raw token
HisKA:95:0.000000778:142:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW48_RS18315
Histidine kinase, Classic
Clostridioides difficile · GCF_016767095
ClassHKTypeClassicLength306 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767095#JMW48_RS18315Stable P2CS identifier used across views.
GenomeGCF_016767095Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 306 aa (51.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-296 aa · 109 aa · 35.6% of protein
Raw token
HATPase_c:188:6.55e-24:296:109:109- Raw architecture: HisKA:95:0.000000778:142:53:64#HATPase_c:188:6.55e-24:296:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767095::NZ_CP068556.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3992929-3994635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW48_18315RefSeq proteinWP_330427947.1
Context group ID
GCF_016767095::NZ_CP068556.1::G00054Context members
JMW48_RS18310JMW48_RS18315
Partner locus tags
JMW48_RS18310JMW48_RS18315
Partner old locus tags
JMW48_18310JMW48_18315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330427947.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW48_RS18315Primary locus identifier stored in the genes table.
Old locus tagJMW48_18315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068556.1Sequence record reported by the local genomic context database.
Genomic interval3 993 715-3 994 635 nt921 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 992 929-3 994 635 ntGCF_016767095::NZ_CP068556.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767095::NZ_CP068556.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068556.1All displayed genes belong to this local TCS context.
Neighborhood span3 992 929-3 994 635 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 992 929 nt3 994 635 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW48_RS18310GCF_016767095#JMW48_RS18310
RROmpR
3 992 929-3 993 621 nt · Forward (+)
JMW48_RS18315GCF_016767095#JMW48_RS18315
HKClassicCurrent focus
3 993 715-3 994 635 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210435#CDM120_RS15135Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849780
Simplified PFAM architecture for HKOC_2849780
PFAM domain coverage: 109 / 334 aa (32.6%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-325]
- Domain count: 1
- Matched identifier: HKOC_2849780
- Positioned domains: HATPase_c 217-325
Cluster members and taxonomy
Representative gene: GCF_000210435#CDM120_RS15135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767095
AssemblyASM1676709v1 · Complete Genomehaploid
Genome composition4 184 560 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 49 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key