1 HisKA#1
123-170 aa · 48 aa · 14.4% of protein
Raw token
HisKA:123:0.000000679:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW51_RS06120
Histidine kinase, Classic
Clostridioides difficile · GCF_016767055
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767055#JMW51_RS06120Stable P2CS identifier used across views.
GenomeGCF_016767055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 334 aa (47.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-324 aa · 109 aa · 32.6% of protein
Raw token
HATPase_c:216:8.53e-24:324:109:109- Raw architecture: HisKA:123:0.000000679:170:53:64#HATPase_c:216:8.53e-24:324:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767055::NZ_CP068557.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1289522-1291228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW51_06120RefSeq proteinWP_003422603.1
Context group ID
GCF_016767055::NZ_CP068557.1::G00016Context members
JMW51_RS06115JMW51_RS06120
Partner locus tags
JMW51_RS06115JMW51_RS06120
Partner old locus tags
JMW51_06115JMW51_06120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422603.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GZU6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GZU6_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW51_RS06120Primary locus identifier stored in the genes table.
Old locus tagJMW51_06120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068557.1Sequence record reported by the local genomic context database.
Genomic interval1 290 224-1 291 228 nt1 005 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 289 522-1 291 228 ntGCF_016767055::NZ_CP068557.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767055::NZ_CP068557.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068557.1All displayed genes belong to this local TCS context.
Neighborhood span1 289 522-1 291 228 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 289 522 nt1 291 228 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW51_RS06115GCF_016767055#JMW51_RS06115
RROmpR
1 289 522-1 290 214 nt · Forward (+)
JMW51_RS06120GCF_016767055#JMW51_RS06120
HKClassicCurrent focus
1 290 224-1 291 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210435#CDM120_RS15135Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849780
Simplified PFAM architecture for HKOC_2849780
PFAM domain coverage: 109 / 334 aa (32.6%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-325]
- Domain count: 1
- Matched identifier: HKOC_2849780
- Positioned domains: HATPase_c 217-325
Cluster members and taxonomy
Representative gene: GCF_000210435#CDM120_RS15135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767055
AssemblyASM1676705v1 · Complete Genomehaploid
Genome composition4 004 108 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 50 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key