1 Response_reg#1
3-113 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:3:4.48e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW51_RS05920
Response regulator OmpR family
Clostridioides difficile · GCF_016767055
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016767055#JMW51_RS05920Stable P2CS identifier used across views.
GenomeGCF_016767055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:145:1.19e-20:218:75:77- Raw architecture: Response_reg:3:4.48e-31:113:111:111#Trans_reg_C:145:1.19e-20:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016767055::NZ_CP068557.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1244362-1245033Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW51_05920RefSeq proteinWP_003422562.1
Context group ID
GCF_016767055::NZ_CP068557.1::G00015Context members
JMW51_RS05920
Partner locus tags
JMW51_RS05920
Partner old locus tags
JMW51_05920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422562.1Primary protein accession used for annex mappings.
UniProt accessionD5Q8C6Primary UniProt accession resolved in the annex database.
UniProt IDD5Q8C6_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW51_RS05920Primary locus identifier stored in the genes table.
Old locus tagJMW51_05920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068557.1Sequence record reported by the local genomic context database.
Genomic interval1 244 362-1 245 033 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 244 362-1 245 033 ntGCF_016767055::NZ_CP068557.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767055::NZ_CP068557.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068557.1All displayed genes belong to this local TCS context.
Neighborhood span1 244 362-1 245 033 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 244 362 nt1 245 033 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JMW51_RS05920GCF_016767055#JMW51_RS05920
RROmpRCurrent focus
1 244 362-1 245 033 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0214680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587377
Simplified PFAM architecture for RROC_1587377
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1587377
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0214680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767055
AssemblyASM1676705v1 · Complete Genomehaploid
Genome composition4 004 108 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 50 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key