1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.1e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW51_RS04980
Response regulator OmpR family
Clostridioides difficile · GCF_016767055
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767055#JMW51_RS04980Stable P2CS identifier used across views.
GenomeGCF_016767055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:8.87e-31:219:77:77- Raw architecture: Response_reg:4:1.1e-34:113:111:111#Trans_reg_C:146:8.87e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767055::NZ_CP068557.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1009156-1010954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW51_04980RefSeq proteinWP_003422026.1
Context group ID
GCF_016767055::NZ_CP068557.1::G00010Context members
JMW51_RS04980JMW51_RS04985
Partner locus tags
JMW51_RS04980JMW51_RS04985
Partner old locus tags
JMW51_04980JMW51_04985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422026.1Primary protein accession used for annex mappings.
UniProt accessionD5Q7T5Primary UniProt accession resolved in the annex database.
UniProt IDD5Q7T5_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW51_RS04980Primary locus identifier stored in the genes table.
Old locus tagJMW51_04980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068557.1Sequence record reported by the local genomic context database.
Genomic interval1 009 156-1 009 827 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 009 156-1 010 954 ntGCF_016767055::NZ_CP068557.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767055::NZ_CP068557.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068557.1All displayed genes belong to this local TCS context.
Neighborhood span1 009 156-1 010 954 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 009 156 nt1 010 954 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW51_RS04980GCF_016767055#JMW51_RS04980
RROmpRCurrent focus
1 009 156-1 009 827 nt · Forward (+)
JMW51_RS04985GCF_016767055#JMW51_RS04985
HKClassic
1 009 824-1 010 954 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0215695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587378
Simplified PFAM architecture for RROC_1587378
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1587378
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0215695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767055
AssemblyASM1676705v1 · Complete Genomehaploid
Genome composition4 004 108 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 50 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key