1 SBP_bac_3#1
35-255 aa · 221 aa · 34.5% of protein
Raw token
SBP_bac_3:35:2.05e-42:255:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW55_RS14620
Histidine kinase, Classic
Clostridioides difficile · GCF_016767035
ClassHKTypeClassicLength641 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767035#JMW55_RS14620Stable P2CS identifier used across views.
GenomeGCF_016767035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length641 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage388 / 641 aa (60.5%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa641 aa
Domain-by-domain annotation3 items
2 HisKA#2
423-485 aa · 63 aa · 9.8% of protein
Raw token
HisKA:423:0.0000000000000455:485:63:643 HATPase_c#3
534-637 aa · 104 aa · 16.2% of protein
Raw token
HATPase_c:534:3.46e-23:637:105:109- Raw architecture: SBP_bac_3:35:2.05e-42:255:230:224#HisKA:423:0.0000000000000455:485:63:64#HATPase_c:534:3.46e-23:637:105:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767035::NZ_CP068560.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3231523-3234770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW55_14620RefSeq proteinWP_235690218.1
Context group ID
GCF_016767035::NZ_CP068560.1::G00044Context members
JMW55_RS14615JMW55_RS14620
Partner locus tags
JMW55_RS14615JMW55_RS14620
Partner old locus tags
JMW55_14615JMW55_14620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235690218.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW55_RS14620Primary locus identifier stored in the genes table.
Old locus tagJMW55_14620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068560.1Sequence record reported by the local genomic context database.
Genomic interval3 232 845-3 234 770 nt1 926 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 231 523-3 234 770 ntGCF_016767035::NZ_CP068560.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767035::NZ_CP068560.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068560.1All displayed genes belong to this local TCS context.
Neighborhood span3 231 523-3 234 770 nt3 248 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 231 523 nt3 234 770 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW55_RS14615GCF_016767035#JMW55_RS14615
RRNtrC
3 231 523-3 232 845 nt · Reverse (-)
JMW55_RS14620GCF_016767035#JMW55_RS14620
HKClassicCurrent focus
3 232 845-3 234 770 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0208605Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0860240
Simplified PFAM architecture for HKOC_0860240
PFAM domain coverage: 385 / 664 aa (58.0%)
1 aa664 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[60-277] | HisKA[448-509] | HATPase_c[555-659]
- Domain count: 3
- Matched identifier: HKOC_0860240
- Positioned domains: SBP_bac_3 60-277 ; HisKA 448-509 ; HATPase_c 555-659
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0208605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767035
AssemblyASM1676703v1 · Complete Genomehaploid
Genome composition3 951 345 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key