1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:1.01e-30:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW55_RS13710
Response regulator OmpR family
Clostridioides difficile · GCF_016767035
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767035#JMW55_RS13710Stable P2CS identifier used across views.
GenomeGCF_016767035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:145:1.18e-27:219:75:77- Raw architecture: Response_reg:4:1.01e-30:112:110:111#Trans_reg_C:145:1.18e-27:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767035::NZ_CP068560.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3040012-3041593Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW55_13710RefSeq proteinWP_003424114.1
Context group ID
GCF_016767035::NZ_CP068560.1::G00038Context members
JMW55_RS13710JMW55_RS13715
Partner locus tags
JMW55_RS13710JMW55_RS13715
Partner old locus tags
JMW55_13710JMW55_13715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003424114.1Primary protein accession used for annex mappings.
UniProt accessionD5Q436Primary UniProt accession resolved in the annex database.
UniProt IDD5Q436_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW55_RS13710Primary locus identifier stored in the genes table.
Old locus tagJMW55_13710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068560.1Sequence record reported by the local genomic context database.
Genomic interval3 040 012-3 040 683 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 040 012-3 041 593 ntGCF_016767035::NZ_CP068560.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767035::NZ_CP068560.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068560.1All displayed genes belong to this local TCS context.
Neighborhood span3 040 012-3 041 593 nt1 582 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 040 012 nt3 041 593 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW55_RS13710GCF_016767035#JMW55_RS13710
RROmpRCurrent focus
3 040 012-3 040 683 nt · Forward (+)
JMW55_RS13715GCF_016767035#JMW55_RS13715
HKClassic
3 040 685-3 041 593 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0209405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587376
Simplified PFAM architecture for RROC_1587376
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-218]
- Domain count: 2
- Matched identifier: RROC_1587376
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-218 ; Trans_reg_C 145-218
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0209405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767035
AssemblyASM1676703v1 · Complete Genomehaploid
Genome composition3 951 345 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key