1 HisKA#1
185-250 aa · 66 aa · 16.1% of protein
Raw token
HisKA:185:0.000000000193:250:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW49_RS17950
Histidine kinase, Classic
Clostridioides difficile · GCF_016767015
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016767015#JMW49_RS17950Stable P2CS identifier used across views.
GenomeGCF_016767015Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 410 aa (43.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
296-408 aa · 113 aa · 27.6% of protein
Raw token
HATPase_c:296:4.88e-25:408:113:109- Raw architecture: HisKA:185:0.000000000193:250:66:64#HATPase_c:296:4.88e-25:408:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016767015::NZ_CP068561.1::G00055
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3953001-3954233Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW49_17950RefSeq proteinWP_003420373.1
Context group ID
GCF_016767015::NZ_CP068561.1::G00055Context members
JMW49_RS17950
Partner locus tags
JMW49_RS17950
Partner old locus tags
JMW49_17950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003420373.1Primary protein accession used for annex mappings.
UniProt accessionD5Q708Primary UniProt accession resolved in the annex database.
UniProt IDD5Q708_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW49_RS17950Primary locus identifier stored in the genes table.
Old locus tagJMW49_17950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068561.1Sequence record reported by the local genomic context database.
Genomic interval3 953 001-3 954 233 nt1 233 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 953 001-3 954 233 ntGCF_016767015::NZ_CP068561.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767015::NZ_CP068561.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068561.1All displayed genes belong to this local TCS context.
Neighborhood span3 953 001-3 954 233 nt1 233 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 953 001 nt3 954 233 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JMW49_RS17950GCF_016767015#JMW49_RS17950
HKClassicCurrent focus
3 953 001-3 954 233 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0208365Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2354207
Simplified PFAM architecture for HKOC_2354207
PFAM domain coverage: 178 / 410 aa (43.4%)
1 aa410 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[185-250] | HATPase_c[297-408]
- Domain count: 2
- Matched identifier: HKOC_2354207
- Positioned domains: HisKA 185-250 ; HATPase_c 297-408
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0208365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767015
AssemblyASM1676701v1 · Complete Genomehaploid
Genome composition3 955 466 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 49 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key