1 Response_reg#1
11-121 aa · 111 aa · 45.5% of protein
Raw token
Response_reg:11:2.99e-30:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW49_RS07840
Response regulator OmpR family
Clostridioides difficile · GCF_016767015
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767015#JMW49_RS07840Stable P2CS identifier used across views.
GenomeGCF_016767015Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 244 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
162-238 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:162:2.2e-28:238:77:77- Raw architecture: Response_reg:11:2.99e-30:121:112:111#Trans_reg_C:162:2.2e-28:238:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767015::NZ_CP068561.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1712729-1714565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW49_07840RefSeq proteinWP_003421230.1
Context group ID
GCF_016767015::NZ_CP068561.1::G00023Context members
JMW49_RS07840JMW49_RS07845
Partner locus tags
JMW49_RS07840JMW49_RS07845
Partner old locus tags
JMW49_07840JMW49_07845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003421230.1Primary protein accession used for annex mappings.
UniProt accessionD5Q1S1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q1S1_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW49_RS07840Primary locus identifier stored in the genes table.
Old locus tagJMW49_07840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068561.1Sequence record reported by the local genomic context database.
Genomic interval1 712 729-1 713 463 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 712 729-1 714 565 ntGCF_016767015::NZ_CP068561.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767015::NZ_CP068561.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068561.1All displayed genes belong to this local TCS context.
Neighborhood span1 712 729-1 714 565 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 712 729 nt1 714 565 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW49_RS07840GCF_016767015#JMW49_RS07840
RROmpRCurrent focus
1 712 729-1 713 463 nt · Forward (+)
JMW49_RS07845GCF_016767015#JMW49_RS07845
HKClassic
1 713 468-1 714 565 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0200315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806097
Simplified PFAM architecture for RROC_0806097
PFAM domain coverage: 188 / 244 aa (77.0%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-121] | Trans_reg_C[162-238]
- Domain count: 2
- Matched identifier: RROC_0806097
- Positioned domains: Response_reg 11-121 ; Response_reg 11-121 ; Trans_reg_C 162-238 ; Trans_reg_C 162-238
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0200315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767015
AssemblyASM1676701v1 · Complete Genomehaploid
Genome composition3 955 466 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 49 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key