1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:1.47e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW49_RS04105
Response regulator OmpR family
Clostridioides difficile · GCF_016767015
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016767015#JMW49_RS04105Stable P2CS identifier used across views.
GenomeGCF_016767015Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:2.04e-29:226:77:77- Raw architecture: Response_reg:4:1.47e-32:112:110:111#Trans_reg_C:150:2.04e-29:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016767015::NZ_CP068561.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span898572-900196Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW49_04105RefSeq proteinWP_009905133.1
Context group ID
GCF_016767015::NZ_CP068561.1::G00013Context members
JMW49_RS04100JMW49_RS04105
Partner locus tags
JMW49_RS04100JMW49_RS04105
Partner old locus tags
JMW49_04100JMW49_04105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009905133.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3H0J3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3H0J3_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW49_RS04105Primary locus identifier stored in the genes table.
Old locus tagJMW49_04105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068561.1Sequence record reported by the local genomic context database.
Genomic interval899 504-900 196 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span898 572-900 196 ntGCF_016767015::NZ_CP068561.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016767015::NZ_CP068561.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068561.1All displayed genes belong to this local TCS context.
Neighborhood span898 572-900 196 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
898 572 nt900 196 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW49_RS04100GCF_016767015#JMW49_RS04100
HKClassic
898 572-899 507 nt · Reverse (-)
JMW49_RS04105GCF_016767015#JMW49_RS04105
RROmpRCurrent focus
899 504-900 196 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0204120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200139
Simplified PFAM architecture for RROC_1200139
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1200139
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0204120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016767015
AssemblyASM1676701v1 · Complete Genomehaploid
Genome composition3 955 466 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 49 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key