1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:7.64e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW52_RS10870
Response regulator OmpR family
Clostridioides difficile · GCF_016766995
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016766995#JMW52_RS10870Stable P2CS identifier used across views.
GenomeGCF_016766995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:146:3.09e-24:221:78:77- Raw architecture: Response_reg:4:7.64e-30:113:111:111#Trans_reg_C:146:3.09e-24:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016766995::NZ_CP068558.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2260891-2262598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW52_10475RefSeq proteinWP_003424116.1
Context group ID
GCF_016766995::NZ_CP068558.1::G00022Context members
JMW52_RS10865JMW52_RS10870
Partner locus tags
JMW52_RS10865JMW52_RS10870
Partner old locus tags
JMW52_10470JMW52_10475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003424116.1Primary protein accession used for annex mappings.
UniProt accessionD5Q434Primary UniProt accession resolved in the annex database.
UniProt IDD5Q434_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW52_RS10870Primary locus identifier stored in the genes table.
Old locus tagJMW52_10475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068558.1Sequence record reported by the local genomic context database.
Genomic interval2 261 912-2 262 598 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 260 891-2 262 598 ntGCF_016766995::NZ_CP068558.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016766995::NZ_CP068558.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068558.1All displayed genes belong to this local TCS context.
Neighborhood span2 260 891-2 262 598 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 260 891 nt2 262 598 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW52_RS10865GCF_016766995#JMW52_RS10865
HKClassic
2 260 891-2 261 922 nt · Reverse (-)
JMW52_RS10870GCF_016766995#JMW52_RS10870
RROmpRCurrent focus
2 261 912-2 262 598 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0209415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302112
Simplified PFAM architecture for RROC_1302112
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1302112
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0209415
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 312 total members. Page 1 / 7.
GCF_000155065#QAE_RS0209415 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016766995
AssemblyASM1676699v1 · Complete Genomehaploid
Genome composition4 077 288 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 86 · HK 41 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key