1 HisKA#1
46-93 aa · 48 aa · 18.7% of protein
Raw token
HisKA:46:0.000000479:93:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW52_RS05820
Histidine kinase, Classic
Clostridioides difficile · GCF_016766995
ClassHKTypeClassicLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016766995#JMW52_RS05820Stable P2CS identifier used across views.
GenomeGCF_016766995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 257 aa (61.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
139-247 aa · 109 aa · 42.4% of protein
Raw token
HATPase_c:139:6.23e-24:247:109:109- Raw architecture: HisKA:46:0.000000479:93:53:64#HATPase_c:139:6.23e-24:247:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016766995::NZ_CP068558.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1125290-1126996Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJMW52_05555RefSeq proteinWP_330365399.1
Context group ID
GCF_016766995::NZ_CP068558.1::G00011Context members
JMW52_RS05815JMW52_RS05820
Partner locus tags
JMW52_RS05815JMW52_RS05820
Partner old locus tags
JMW52_05550JMW52_05555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330365399.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW52_RS05820Primary locus identifier stored in the genes table.
Old locus tagJMW52_05555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068558.1Sequence record reported by the local genomic context database.
Genomic interval1 126 223-1 126 996 nt774 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 125 290-1 126 996 ntGCF_016766995::NZ_CP068558.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016766995::NZ_CP068558.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068558.1All displayed genes belong to this local TCS context.
Neighborhood span1 125 290-1 126 996 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 125 290 nt1 126 996 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JMW52_RS05815GCF_016766995#JMW52_RS05815
RROmpR
1 125 290-1 125 982 nt · Forward (+)
JMW52_RS05820GCF_016766995#JMW52_RS05820
HKClassicCurrent focus
1 126 223-1 126 996 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0214480Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2916041
Simplified PFAM architecture for HKOC_2916041
PFAM domain coverage: 109 / 257 aa (42.4%)
1 aa257 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[140-248]
- Domain count: 1
- Matched identifier: HKOC_2916041
- Positioned domains: HATPase_c 140-248
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0214480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016766995
AssemblyASM1676699v1 · Complete Genomehaploid
Genome composition4 077 288 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 86 · HK 41 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key