1 Response_reg#1
6-112 aa · 107 aa · 77.5% of protein
Raw token
Response_reg:6:8.85e-19:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMW52_RS03945
Response regulator, CheY family
Clostridioides difficile · GCF_016766995
ClassRRTypeCheYLength138 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016766995#JMW52_RS03945Stable P2CS identifier used across views.
GenomeGCF_016766995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length138 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage107 / 138 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa138 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:8.85e-19:112:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016766995::NZ_CP068558.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span719800-720216Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_016766995::NZ_CP068558.1::G00005Context members
JMW52_RS03945
Partner locus tags
JMW52_RS03945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237775139.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMW52_RS03945Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP068558.1Sequence record reported by the local genomic context database.
Genomic interval719 800-720 216 nt417 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span719 800-720 216 ntGCF_016766995::NZ_CP068558.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016766995::NZ_CP068558.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068558.1All displayed genes belong to this local TCS context.
Neighborhood span719 800-720 216 nt417 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
719 800 nt720 216 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JMW52_RS03945GCF_016766995#JMW52_RS03945
RRCheYCurrent focus
719 800-720 216 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016766995#JMW52_RS03945The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2275621
Simplified PFAM architecture for RROC_2275621
PFAM domain coverage: 111 / 138 aa (80.4%)
1 aa138 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-116]
- Domain count: 1
- Matched identifier: RROC_2275621
- Positioned domains: Response_reg 6-116
Cluster members and taxonomy
Representative gene: GCF_016766995#JMW52_RS03945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016766995
AssemblyASM1676699v1 · Complete Genomehaploid
Genome composition4 077 288 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 86 · HK 41 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key