1 HAMP#1
62-131 aa · 70 aa · 20.0% of protein
Raw token
HAMP:62:0.000000497:131:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6I63_RS01685
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_016766855
ClassHKTypeClassicLength350 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016766855#I6I63_RS01685Stable P2CS identifier used across views.
GenomeGCF_016766855Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 350 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
135-198 aa · 64 aa · 18.3% of protein
Raw token
HisKA:135:0.00000000000138:198:64:643 HATPase_c#3
244-345 aa · 102 aa · 29.1% of protein
Raw token
HATPase_c:244:9.24e-20:345:104:109- Raw architecture: HAMP:62:0.000000497:131:70:69#HisKA:135:0.00000000000138:198:64:64#HATPase_c:244:9.24e-20:345:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016766855::NZ_CP068485.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span358426-360128Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6I63_01685RefSeq proteinWP_008792339.1
Context group ID
GCF_016766855::NZ_CP068485.1::G00006Context members
I6I63_RS01680I6I63_RS01685
Partner locus tags
I6I63_RS01680I6I63_RS01685
Partner old locus tags
I6I63_01680I6I63_01685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008792339.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q2X4E2Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q2X4E2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6I63_RS01685Primary locus identifier stored in the genes table.
Old locus tagI6I63_01685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068485.1Sequence record reported by the local genomic context database.
Genomic interval359 076-360 128 nt1 053 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span358 426-360 128 ntGCF_016766855::NZ_CP068485.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016766855::NZ_CP068485.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068485.1All displayed genes belong to this local TCS context.
Neighborhood span358 426-360 128 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
358 426 nt360 128 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I6I63_RS01680GCF_016766855#I6I63_RS01680
RROmpR
358 426-359 079 nt · Forward (+)
I6I63_RS01685GCF_016766855#I6I63_RS01685
HKClassicCurrent focus
359 076-360 128 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457805#DWY98_RS17385Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2797884
Simplified PFAM architecture for HKOC_2797884
PFAM domain coverage: 167 / 350 aa (47.7%)
1 aa350 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[135-198] | HATPase_c[245-347]
- Domain count: 2
- Matched identifier: HKOC_2797884
- Positioned domains: HisKA 135-198 ; HATPase_c 245-347
Cluster members and taxonomy
Representative gene: GCF_003457805#DWY98_RS17385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_016766855
AssemblyASM1676685v1 · Chromosomehaploid
Genome composition3 426 528 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 48 · HK 21 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key