1 Response_reg#1
44-130 aa · 87 aa · 37.7% of protein
Raw token
Response_reg:44:0.0000000000000694:130:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JL738_RS02630
Response regulator NarL family
Bifidobacterium longum subsp. suis · GCF_016759725
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016759725#JL738_RS02630Stable P2CS identifier used across views.
GenomeGCF_016759725Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 231 aa (62.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-224 aa · 57 aa · 24.7% of protein
Raw token
HTH_LUXR:168:0.00000000000000601:224:57:58- Raw architecture: Response_reg:44:0.0000000000000694:130:87:111#HTH_LUXR:168:0.00000000000000601:224:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016759725::NZ_JAERWE010000005.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span339570-340265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJL738_02630RefSeq proteinWP_200408704.1
Context group ID
GCF_016759725::NZ_JAERWE010000005.1::G00009Context members
JL738_RS02630
Partner locus tags
JL738_RS02630
Partner old locus tags
JL738_02630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_200408704.1Primary protein accession used for annex mappings.
UniProt accessionA0A7L9UMG7Primary UniProt accession resolved in the annex database.
UniProt IDA0A7L9UMG7_BIFLLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJL738_RS02630Primary locus identifier stored in the genes table.
Old locus tagJL738_02630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAERWE010000005.1Sequence record reported by the local genomic context database.
Genomic interval339 570-340 265 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span339 570-340 265 ntGCF_016759725::NZ_JAERWE010000005.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016759725::NZ_JAERWE010000005.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAERWE010000005.1All displayed genes belong to this local TCS context.
Neighborhood span339 570-340 265 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
339 570 nt340 265 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JL738_RS02630GCF_016759725#JL738_RS02630
RRNarLCurrent focus
339 570-340 265 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014900875#BL5915_RS07720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1174973
Simplified PFAM architecture for RROC_1174973
PFAM domain coverage: 145 / 231 aa (62.8%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[38-129] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1174973
- Positioned domains: Response_reg 38-129 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_014900875#BL5915_RS07720
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 2 over 2 total members. Page 1 / 1.
GCF_014900875#BL5915_RS07720 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 695 · GCF_016759725
AssemblyASM1675972v1 · Contighaploid
Genome composition2 300 337 bp · 60,0% GCBifidobacterium longum subsp. suis
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key