1 H_kinase_N#1
9-144 aa · 136 aa · 27.6% of protein
Raw token
H_kinase_N:9:8.96e-49:144:137:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JL735_RS10335
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_016759705
ClassHKTypeClassicLength492 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016759705#JL735_RS10335Stable P2CS identifier used across views.
GenomeGCF_016759705Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length492 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage410 / 492 aa (83.3%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa492 aa
Domain-by-domain annotation4 items
2 PAS_4#2
173-278 aa · 106 aa · 21.5% of protein
Raw token
PAS_4:173:0.0000308:278:113:1103 HisKA_2#3
292-361 aa · 70 aa · 14.2% of protein
Raw token
HisKA_2:292:3.37e-30:361:71:764 HATPase_c#4
388-485 aa · 98 aa · 19.9% of protein
Raw token
HATPase_c:388:2.84e-16:485:107:109- Raw architecture: H_kinase_N:9:8.96e-49:144:137:139#PAS_4:173:0.0000308:278:113:110#HisKA_2:292:3.37e-30:361:71:76#HATPase_c:388:2.84e-16:485:107:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016759705::NZ_JAERWD010000024.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span125-1603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJL735_10305RefSeq proteinWP_202569909.1
Context group ID
GCF_016759705::NZ_JAERWD010000024.1::G00007Context members
JL735_RS10335
Partner locus tags
JL735_RS10335
Partner old locus tags
JL735_10305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202569909.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJL735_RS10335Primary locus identifier stored in the genes table.
Old locus tagJL735_10305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAERWD010000024.1Sequence record reported by the local genomic context database.
Genomic interval125-1 603 nt1 479 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125-1 603 ntGCF_016759705::NZ_JAERWD010000024.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016759705::NZ_JAERWD010000024.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAERWD010000024.1All displayed genes belong to this local TCS context.
Neighborhood span125-1 603 nt1 479 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 nt1 603 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JL735_RS10335GCF_016759705#JL735_RS10335
HKClassicCurrent focus
125-1 603 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016759705#JL735_RS10335The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1523525
Simplified PFAM architecture for HKOC_1523525
PFAM domain coverage: 311 / 492 aa (63.2%)
1 aa492 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[4-144] | HisKA_2[292-361] | HATPase_c[388-487]
- Domain count: 3
- Matched identifier: HKOC_1523525
- Positioned domains: GAF_PdtaS 4-144 ; HisKA_2 292-361 ; HATPase_c 388-487
Cluster members and taxonomy
Representative gene: GCF_016759705#JL735_RS10335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_016759705
AssemblyASM1675970v1 · Contighaploid
Genome composition2 424 328 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 25 · HK 11 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key