1 Response_reg#1
9-119 aa · 111 aa · 45.3% of protein
Raw token
Response_reg:9:9.22e-38:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JL735_RS04585
Response regulator OmpR family
Bifidobacterium longum subsp. longum · GCF_016759705
ClassRRTypeOmpRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016759705#JL735_RS04585Stable P2CS identifier used across views.
GenomeGCF_016759705Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 245 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-238 aa · 86 aa · 35.1% of protein
Raw token
Trans_reg_C:153:3.65e-29:238:86:77- Raw architecture: Response_reg:9:9.22e-38:119:111:111#Trans_reg_C:153:3.65e-29:238:86:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016759705::NZ_JAERWD010000009.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span18-755Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJL735_04570RefSeq proteinWP_202569704.1
Context group ID
GCF_016759705::NZ_JAERWD010000009.1::G00014Context members
JL735_RS04585
Partner locus tags
JL735_RS04585
Partner old locus tags
JL735_04570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202569704.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJL735_RS04585Primary locus identifier stored in the genes table.
Old locus tagJL735_04570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAERWD010000009.1Sequence record reported by the local genomic context database.
Genomic interval18-755 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18-755 ntGCF_016759705::NZ_JAERWD010000009.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016759705::NZ_JAERWD010000009.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAERWD010000009.1All displayed genes belong to this local TCS context.
Neighborhood span18-755 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 nt755 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JL735_RS04585GCF_016759705#JL735_RS04585
RROmpRCurrent focus
18-755 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016759705#JL735_RS04585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0796636
Simplified PFAM architecture for RROC_0796636
PFAM domain coverage: 196 / 245 aa (80.0%)
1 aa245 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-119] | Trans_reg_C[153-237]
- Domain count: 2
- Matched identifier: RROC_0796636
- Positioned domains: Response_reg 9-119 ; Trans_reg_C 153-237
Cluster members and taxonomy
Representative gene: GCF_016759705#JL735_RS04585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_016759705
AssemblyASM1675970v1 · Contighaploid
Genome composition2 424 328 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 25 · HK 11 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key