1 HAMP#1
306-373 aa · 68 aa · 11.1% of protein
Raw token
HAMP:306:0.00000000000493:373:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT95_RS13190
Histidine kinase, Classic
Bacillus sp. TH17 · GCF_016651125
ClassHKTypeClassicLength614 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651125#JFT95_RS13190Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length614 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 614 aa (39.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa614 aa
Domain-by-domain annotation3 items
2 HisKA#2
393-457 aa · 65 aa · 10.6% of protein
Raw token
HisKA:393:1.6e-16:457:65:643 HATPase_c#3
501-608 aa · 108 aa · 17.6% of protein
Raw token
HATPase_c:501:3.31e-19:608:109:109- Raw architecture: HAMP:306:0.00000000000493:373:68:69#HisKA:393:1.6e-16:457:65:64#HATPase_c:501:3.31e-19:608:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651125::NZ_JAEKEN010000001.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2589202-2591726Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT95_13190RefSeq proteinWP_201053651.1
Context group ID
GCF_016651125::NZ_JAEKEN010000001.1::G00039Context members
JFT95_RS13190JFT95_RS13195
Partner locus tags
JFT95_RS13190JFT95_RS13195
Partner old locus tags
JFT95_13190JFT95_13195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201053651.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT95_RS13190Primary locus identifier stored in the genes table.
Old locus tagJFT95_13190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEN010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 589 202-2 591 046 nt1 845 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 589 202-2 591 726 ntGCF_016651125::NZ_JAEKEN010000001.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651125::NZ_JAEKEN010000001.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 589 202-2 591 726 nt2 525 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 589 202 nt2 591 726 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT95_RS13190GCF_016651125#JFT95_RS13190
HKClassicCurrent focus
2 589 202-2 591 046 nt · Reverse (-)
JFT95_RS13195GCF_016651125#JFT95_RS13195
RROmpR
2 591 046-2 591 726 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651125#JFT95_RS13190The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0992341
Simplified PFAM architecture for HKOC_0992341
PFAM domain coverage: 223 / 614 aa (36.3%)
1 aa614 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[323-373] | HisKA[393-457] | HATPase_c[502-608]
- Domain count: 3
- Matched identifier: HKOC_0992341
- Positioned domains: HAMP 323-373 ; HisKA 393-457 ; HATPase_c 502-608
Cluster members and taxonomy
Representative gene: GCF_016651125#JFT95_RS13190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 383 · GCF_016651125
AssemblyASM1665112v1 · Contighaploid
Genome composition5 747 064 bp · 35,5% GCBacillus sp. TH17
Signal transduction countsGenes 119 · HK 63 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key