1 HAMP#1
67-126 aa · 60 aa · 16.5% of protein
Raw token
HAMP:67:0.000000354:126:60:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT95_RS13135
Histidine kinase, Classic
Bacillus sp. TH17 · GCF_016651125
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016651125#JFT95_RS13135Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 364 aa (65.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-204 aa · 68 aa · 18.7% of protein
Raw token
HisKA:137:0.00000000000158:204:68:643 HATPase_c#3
249-360 aa · 112 aa · 30.8% of protein
Raw token
HATPase_c:249:7.06e-25:360:113:109- Raw architecture: HAMP:67:0.000000354:126:60:69#HisKA:137:0.00000000000158:204:68:64#HATPase_c:249:7.06e-25:360:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016651125::NZ_JAEKEN010000001.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2575801-2576895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT95_13135RefSeq proteinWP_201052471.1
Context group ID
GCF_016651125::NZ_JAEKEN010000001.1::G00038Context members
JFT95_RS13135
Partner locus tags
JFT95_RS13135
Partner old locus tags
JFT95_13135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201052471.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT95_RS13135Primary locus identifier stored in the genes table.
Old locus tagJFT95_13135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEN010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 575 801-2 576 895 nt1 095 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 575 801-2 576 895 ntGCF_016651125::NZ_JAEKEN010000001.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651125::NZ_JAEKEN010000001.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 575 801-2 576 895 nt1 095 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 575 801 nt2 576 895 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT95_RS13135GCF_016651125#JFT95_RS13135
HKClassicCurrent focus
2 575 801-2 576 895 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651125#JFT95_RS13135The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2727083
Simplified PFAM architecture for HKOC_2727083
PFAM domain coverage: 222 / 364 aa (61.0%)
1 aa364 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[81-125] | HisKA[138-203] | HATPase_c[249-359]
- Domain count: 3
- Matched identifier: HKOC_2727083
- Positioned domains: HAMP 81-125 ; HisKA 138-203 ; HATPase_c 249-359
Cluster members and taxonomy
Representative gene: GCF_016651125#JFT95_RS13135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 383 · GCF_016651125
AssemblyASM1665112v1 · Contighaploid
Genome composition5 747 064 bp · 35,5% GCBacillus sp. TH17
Signal transduction countsGenes 119 · HK 63 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key