1 HisKA_3#1
199-266 aa · 68 aa · 16.8% of protein
Raw token
HisKA_3:199:7.32e-18:266:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT95_RS03295
Histidine kinase, Classic
Bacillus sp. TH17 · GCF_016651125
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651125#JFT95_RS03295Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 405 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-395 aa · 87 aa · 21.5% of protein
Raw token
HATPase_c:309:0.00000000000000233:395:100:109- Raw architecture: HisKA_3:199:7.32e-18:266:68:68#HATPase_c:309:0.00000000000000233:395:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651125::NZ_JAEKEN010000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span676425-678276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT95_03295RefSeq proteinWP_088038718.1
Context group ID
GCF_016651125::NZ_JAEKEN010000001.1::G00012Context members
JFT95_RS03295JFT95_RS03300
Partner locus tags
JFT95_RS03295JFT95_RS03300
Partner old locus tags
JFT95_03295JFT95_03300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088038718.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT95_RS03295Primary locus identifier stored in the genes table.
Old locus tagJFT95_03295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEN010000001.1Sequence record reported by the local genomic context database.
Genomic interval676 425-677 642 nt1 218 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span676 425-678 276 ntGCF_016651125::NZ_JAEKEN010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651125::NZ_JAEKEN010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span676 425-678 276 nt1 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
676 425 nt678 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT95_RS03295GCF_016651125#JFT95_RS03295
HKClassicCurrent focus
676 425-677 642 nt · Forward (+)
JFT95_RS03300GCF_016651125#JFT95_RS03300
RRNarL
677 632-678 276 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651075#JFU54_RS21200Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2400870
Simplified PFAM architecture for HKOC_2400870
PFAM domain coverage: 157 / 405 aa (38.8%)
1 aa405 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[199-265] | HATPase_c[307-396]
- Domain count: 2
- Matched identifier: HKOC_2400870
- Positioned domains: HisKA_3 199-265 ; HATPase_c 307-396
Cluster members and taxonomy
Representative gene: GCF_016651075#JFU54_RS21200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 383 · GCF_016651125
AssemblyASM1665112v1 · Contighaploid
Genome composition5 747 064 bp · 35,5% GCBacillus sp. TH17
Signal transduction countsGenes 119 · HK 63 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key