1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:7.67e-19:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT95_RS02960
Response regulator, unclassified
Bacillus sp. TH17 · GCF_016651125
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016651125#JFT95_RS02960Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 225 aa (50.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:7.67e-19:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016651125::NZ_JAEKEN010000001.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span609753-610430Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT95_02960RefSeq proteinWP_159146290.1
Context group ID
GCF_016651125::NZ_JAEKEN010000001.1::G00009Context members
JFT95_RS02960
Partner locus tags
JFT95_RS02960
Partner old locus tags
JFT95_02960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_159146290.1Primary protein accession used for annex mappings.
UniProt accessionA0A653V7L1Primary UniProt accession resolved in the annex database.
UniProt IDA0A653V7L1_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT95_RS02960Primary locus identifier stored in the genes table.
Old locus tagJFT95_02960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEN010000001.1Sequence record reported by the local genomic context database.
Genomic interval609 753-610 430 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span609 753-610 430 ntGCF_016651125::NZ_JAEKEN010000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651125::NZ_JAEKEN010000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span609 753-610 430 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
609 753 nt610 430 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT95_RS02960GCF_016651125#JFT95_RS02960
RRunclassifiedCurrent focus
609 753-610 430 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651125#JFT95_RS02960The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1492557
Simplified PFAM architecture for RROC_1492557
PFAM domain coverage: 177 / 225 aa (78.7%)
1 aa225 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[4-115] | HTH_64[158-222]
- Domain count: 2
- Matched identifier: RROC_1492557
- Positioned domains: Response_reg 4-115 ; HTH_64 158-222
Cluster members and taxonomy
Representative gene: GCF_016651125#JFT95_RS02960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 383 · GCF_016651125
AssemblyASM1665112v1 · Contighaploid
Genome composition5 747 064 bp · 35,5% GCBacillus sp. TH17
Signal transduction countsGenes 119 · HK 63 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key