1 HAMP#1
186-253 aa · 68 aa · 14.1% of protein
Raw token
HAMP:186:0.000000000049:253:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS20725
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS20725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 481 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-324 aa · 66 aa · 13.7% of protein
Raw token
HisKA:259:0.0000000000000766:324:66:643 HATPase_c#3
371-481 aa · 111 aa · 23.1% of protein
Raw token
HATPase_c:371:8.77e-34:481:111:109- Raw architecture: HAMP:186:0.000000000049:253:70:69#HisKA:259:0.0000000000000766:324:66:64#HATPase_c:371:8.77e-34:481:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000037.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span329904-332098Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_20725RefSeq proteinWP_002063733.1
Context group ID
GCF_016650935::NZ_JAEKEU010000037.1::G00052Context members
JFT89_RS20725JFT89_RS20730
Partner locus tags
JFT89_RS20725JFT89_RS20730
Partner old locus tags
JFT89_20725JFT89_20730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002063733.1Primary protein accession used for annex mappings.
UniProt accessionC2XP87Primary UniProt accession resolved in the annex database.
UniProt IDC2XP87_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS20725Primary locus identifier stored in the genes table.
Old locus tagJFT89_20725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000037.1Sequence record reported by the local genomic context database.
Genomic interval329 904-331 349 nt1 446 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span329 904-332 098 ntGCF_016650935::NZ_JAEKEU010000037.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000037.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000037.1All displayed genes belong to this local TCS context.
Neighborhood span329 904-332 098 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
329 904 nt332 098 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS20725GCF_016650935#JFT89_RS20725
HKClassicCurrent focus
329 904-331 349 nt · Reverse (-)
JFT89_RS20730GCF_016650935#JFT89_RS20730
RROmpR
331 427-332 098 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS02645Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1611459
Simplified PFAM architecture for HKOC_1611459
PFAM domain coverage: 225 / 481 aa (46.8%)
1 aa481 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[204-253] | HisKA[260-324] | HATPase_c[371-480]
- Domain count: 3
- Matched identifier: HKOC_1611459
- Positioned domains: HAMP 204-253 ; HisKA 260-324 ; HATPase_c 371-480
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS02645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key