1 HisKA#1
199-256 aa · 58 aa · 14.2% of protein
Raw token
HisKA:199:0.00000000000195:256:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS19475
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength408 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016650935#JFT89_RS19475Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length408 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 408 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa408 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-406 aa · 105 aa · 25.7% of protein
Raw token
HATPase_c:302:4.18e-27:406:108:109- Raw architecture: HisKA:199:0.00000000000195:256:58:64#HATPase_c:302:4.18e-27:406:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016650935::NZ_JAEKEU010000037.1::G00048
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span85904-87130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_19475RefSeq proteinWP_201040467.1
Context group ID
GCF_016650935::NZ_JAEKEU010000037.1::G00048Context members
JFT89_RS19475
Partner locus tags
JFT89_RS19475
Partner old locus tags
JFT89_19475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201040467.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS19475Primary locus identifier stored in the genes table.
Old locus tagJFT89_19475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000037.1Sequence record reported by the local genomic context database.
Genomic interval85 904-87 130 nt1 227 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 904-87 130 ntGCF_016650935::NZ_JAEKEU010000037.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000037.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000037.1All displayed genes belong to this local TCS context.
Neighborhood span85 904-87 130 nt1 227 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 904 nt87 130 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT89_RS19475GCF_016650935#JFT89_RS19475
HKClassicCurrent focus
85 904-87 130 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650935#JFT89_RS19475The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2374119
Simplified PFAM architecture for HKOC_2374119
PFAM domain coverage: 326 / 408 aa (79.9%)
1 aa408 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-172] | HisKA[200-256] | HATPase_c[302-407]
- Domain count: 3
- Matched identifier: HKOC_2374119
- Positioned domains: MASE12 10-172 ; HisKA 200-256 ; HATPase_c 302-407
Cluster members and taxonomy
Representative gene: GCF_016650935#JFT89_RS19475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key