1 Response_reg#1
649-760 aa · 112 aa · 11.4% of protein
Raw token
Response_reg:649:1.82e-18:760:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS19405
Histidine kinase, Hybrid
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeHybridLength982 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS19405Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHis_kinaseHATPase_c
Protein length982 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage292 / 982 aa (29.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa982 aa
Domain-by-domain annotation3 items
2 His_kinase#2
777-856 aa · 80 aa · 8.1% of protein
Raw token
His_kinase:777:1.32e-25:856:81:803 HATPase_c#3
877-976 aa · 100 aa · 10.2% of protein
Raw token
HATPase_c:877:0.00000000000000589:976:107:109- Raw architecture: Response_reg:649:1.82e-18:760:113:111#His_kinase:777:1.32e-25:856:81:80#HATPase_c:877:0.00000000000000589:976:107:109
- Domain description: 1 Response_reg,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000037.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69602-73305Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_19405RefSeq proteinWP_016096991.1
Context group ID
GCF_016650935::NZ_JAEKEU010000037.1::G00047Context members
JFT89_RS19400JFT89_RS19405
Partner locus tags
JFT89_RS19400JFT89_RS19405
Partner old locus tags
JFT89_19400JFT89_19405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016096991.1Primary protein accession used for annex mappings.
UniProt accessionR8CKU2Primary UniProt accession resolved in the annex database.
UniProt IDR8CKU2_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS19405Primary locus identifier stored in the genes table.
Old locus tagJFT89_19405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000037.1Sequence record reported by the local genomic context database.
Genomic interval70 357-73 305 nt2 949 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 602-73 305 ntGCF_016650935::NZ_JAEKEU010000037.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000037.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000037.1All displayed genes belong to this local TCS context.
Neighborhood span69 602-73 305 nt3 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 602 nt73 305 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS19400GCF_016650935#JFT89_RS19400
RRunclassified
69 602-70 369 nt · Reverse (-)
JFT89_RS19405GCF_016650935#JFT89_RS19405
HKHybridCurrent focus
70 357-73 305 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS28560Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0304898
Simplified PFAM architecture for HKOC_0304898
PFAM domain coverage: 291 / 982 aa (29.6%)
1 aa982 aa
Response_regHis_kinaseHATPase_c
- Simplified architecture: Response_reg + His_kinase + HATPase_c
- Raw architecture: Response_reg[649-760] | His_kinase[777-856] | HATPase_c[877-975]
- Domain count: 3
- Matched identifier: HKOC_0304898
- Positioned domains: Response_reg 649-760 ; His_kinase 777-856 ; HATPase_c 877-975
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS28560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key