1 HAMP#1
188-257 aa · 70 aa · 11.5% of protein
Raw token
HAMP:188:1.85e-16:257:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS18450
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS18450Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage347 / 611 aa (56.8%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation4 items
2 PAS_9#2
277-373 aa · 97 aa · 15.9% of protein
Raw token
PAS_9:277:0.00000000564:373:102:1023 HisKA#3
380-446 aa · 67 aa · 11.0% of protein
Raw token
HisKA:380:5.96e-18:446:67:644 HATPase_c#4
492-604 aa · 113 aa · 18.5% of protein
Raw token
HATPase_c:492:4.91e-36:604:113:109- Raw architecture: HAMP:188:1.85e-16:257:70:69#PAS_9:277:0.00000000564:373:102:102#HisKA:380:5.96e-18:446:67:64#HATPase_c:492:4.91e-36:604:113:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000036.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span557056-559602Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_18450RefSeq proteinWP_016096417.1
Context group ID
GCF_016650935::NZ_JAEKEU010000036.1::G00045Context members
JFT89_RS18450JFT89_RS18455
Partner locus tags
JFT89_RS18450JFT89_RS18455
Partner old locus tags
JFT89_18450JFT89_18455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016096417.1Primary protein accession used for annex mappings.
UniProt accessionR8CTR3Primary UniProt accession resolved in the annex database.
UniProt IDR8CTR3_BACCEDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS18450Primary locus identifier stored in the genes table.
Old locus tagJFT89_18450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000036.1Sequence record reported by the local genomic context database.
Genomic interval557 056-558 891 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span557 056-559 602 ntGCF_016650935::NZ_JAEKEU010000036.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000036.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000036.1All displayed genes belong to this local TCS context.
Neighborhood span557 056-559 602 nt2 547 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
557 056 nt559 602 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS18450GCF_016650935#JFT89_RS18450
HKClassicCurrent focus
557 056-558 891 nt · Reverse (-)
JFT89_RS18455GCF_016650935#JFT89_RS18455
RROmpR
558 895-559 602 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS23650Use this link to inspect the representative gene detail.
PFAM architectureCache_WalK + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1000837
Simplified PFAM architecture for HKOC_1000837
PFAM domain coverage: 370 / 611 aa (60.6%)
1 aa611 aa
Cache_WalKHAMPPASHisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: Cache_WalK[82-172] | HAMP[205-257] | PAS[269-317] | HisKA[381-446] | HATPase_c[493-603]
- Domain count: 5
- Matched identifier: HKOC_1000837
- Positioned domains: Cache_WalK 82-172 ; HAMP 205-257 ; PAS 269-317 ; HisKA 381-446 ; HATPase_c 493-603
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS23650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key