1 HisKA_3#1
178-241 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:178:2.58e-23:241:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS17895
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS17895Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 376 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
286-367 aa · 82 aa · 21.8% of protein
Raw token
HATPase_c:286:0.0000000000294:367:100:109- Raw architecture: HisKA_3:178:2.58e-23:241:64:68#HATPase_c:286:0.0000000000294:367:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000036.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span428609-430338Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_17895RefSeq proteinWP_002068550.1
Context group ID
GCF_016650935::NZ_JAEKEU010000036.1::G00041Context members
JFT89_RS17890JFT89_RS17895
Partner locus tags
JFT89_RS17890JFT89_RS17895
Partner old locus tags
JFT89_17890JFT89_17895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002068550.1Primary protein accession used for annex mappings.
UniProt accessionC2Y264Primary UniProt accession resolved in the annex database.
UniProt IDC2Y264_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS17895Primary locus identifier stored in the genes table.
Old locus tagJFT89_17895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000036.1Sequence record reported by the local genomic context database.
Genomic interval429 208-430 338 nt1 131 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span428 609-430 338 ntGCF_016650935::NZ_JAEKEU010000036.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000036.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000036.1All displayed genes belong to this local TCS context.
Neighborhood span428 609-430 338 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
428 609 nt430 338 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS17890GCF_016650935#JFT89_RS17890
RRNarL
428 609-429 211 nt · Reverse (-)
JFT89_RS17895GCF_016650935#JFT89_RS17895
HKClassicCurrent focus
429 208-430 338 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS24975Use this link to inspect the representative gene detail.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2641487
Simplified PFAM architecture for HKOC_2641487
PFAM domain coverage: 291 / 376 aa (77.4%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-149] | HisKA_3[178-241] | HATPase_c[284-364]
- Domain count: 3
- Matched identifier: HKOC_2641487
- Positioned domains: DesK_N 4-149 ; HisKA_3 178-241 ; HATPase_c 284-364
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS24975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key