1 HisKA#1
117-169 aa · 53 aa · 16.2% of protein
Raw token
HisKA:117:0.000000509:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS12705
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016650935#JFT89_RS12705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 328 aa (49.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-324 aa · 110 aa · 33.5% of protein
Raw token
HATPase_c:215:3.35e-26:324:110:109- Raw architecture: HisKA:117:0.000000509:169:59:64#HATPase_c:215:3.35e-26:324:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016650935::NZ_JAEKEU010000017.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span323-1309Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_12705RefSeq proteinWP_002069322.1
Context group ID
GCF_016650935::NZ_JAEKEU010000017.1::G00031Context members
JFT89_RS12705
Partner locus tags
JFT89_RS12705
Partner old locus tags
JFT89_12705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002069322.1Primary protein accession used for annex mappings.
UniProt accessionC2Y3E9Primary UniProt accession resolved in the annex database.
UniProt IDC2Y3E9_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS12705Primary locus identifier stored in the genes table.
Old locus tagJFT89_12705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000017.1Sequence record reported by the local genomic context database.
Genomic interval323-1 309 nt987 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span323-1 309 ntGCF_016650935::NZ_JAEKEU010000017.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000017.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000017.1All displayed genes belong to this local TCS context.
Neighborhood span323-1 309 nt987 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
323 nt1 309 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT89_RS12705GCF_016650935#JFT89_RS12705
HKClassicCurrent focus
323-1 309 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS27285Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2859513
Simplified PFAM architecture for HKOC_2859513
PFAM domain coverage: 110 / 328 aa (33.5%)
1 aa328 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-325]
- Domain count: 1
- Matched identifier: HKOC_2859513
- Positioned domains: HATPase_c 216-325
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS27285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key