1 HAMP#1
59-127 aa · 69 aa · 19.2% of protein
Raw token
HAMP:59:0.0000000168:127:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS12290
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016650935#JFT89_RS12290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 360 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
139-202 aa · 64 aa · 17.8% of protein
Raw token
HisKA:139:0.0000000000000115:202:64:643 HATPase_c#3
252-349 aa · 98 aa · 27.2% of protein
Raw token
HATPase_c:252:1.95e-16:349:98:109- Raw architecture: HAMP:59:0.0000000168:127:69:69#HisKA:139:0.0000000000000115:202:64:64#HATPase_c:252:1.95e-16:349:98:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016650935::NZ_JAEKEU010000014.1::G00030
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span6946-8028Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_12290RefSeq proteinWP_033707454.1
Context group ID
GCF_016650935::NZ_JAEKEU010000014.1::G00030Context members
JFT89_RS12290
Partner locus tags
JFT89_RS12290
Partner old locus tags
JFT89_12290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033707454.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS12290Primary locus identifier stored in the genes table.
Old locus tagJFT89_12290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000014.1Sequence record reported by the local genomic context database.
Genomic interval6 946-8 028 nt1 083 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 946-8 028 ntGCF_016650935::NZ_JAEKEU010000014.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000014.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000014.1All displayed genes belong to this local TCS context.
Neighborhood span6 946-8 028 nt1 083 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 946 nt8 028 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT89_RS12290GCF_016650935#JFT89_RS12290
HKClassicCurrent focus
6 946-8 028 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS27335Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2747013
Simplified PFAM architecture for HKOC_2747013
PFAM domain coverage: 205 / 360 aa (56.9%)
1 aa360 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-126] | HisKA[139-202] | HATPase_c[252-349]
- Domain count: 3
- Matched identifier: HKOC_2747013
- Positioned domains: HAMP 84-126 ; HisKA 139-202 ; HATPase_c 252-349
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS27335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key