1 Response_reg#1
3-112 aa · 110 aa · 53.4% of protein
Raw token
Response_reg:3:1.77e-24:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS11435
Response regulator OmpR family
Bacillus sp. TH25 · GCF_016650935
ClassRRTypeOmpRLength206 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016650935#JFT89_RS11435Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 206 aa (76.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-195 aa · 48 aa · 23.3% of protein
Raw token
Trans_reg_C:148:0.00000000000000204:195:48:77- Raw architecture: Response_reg:3:1.77e-24:112:111:111#Trans_reg_C:148:0.00000000000000204:195:48:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016650935::NZ_JAEKEU010000009.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1391269-1391889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_11435RefSeq proteinWP_201040003.1
Context group ID
GCF_016650935::NZ_JAEKEU010000009.1::G00027Context members
JFT89_RS11435
Partner locus tags
JFT89_RS11435
Partner old locus tags
JFT89_11435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201040003.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS11435Primary locus identifier stored in the genes table.
Old locus tagJFT89_11435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000009.1Sequence record reported by the local genomic context database.
Genomic interval1 391 269-1 391 889 nt621 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 391 269-1 391 889 ntGCF_016650935::NZ_JAEKEU010000009.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000009.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000009.1All displayed genes belong to this local TCS context.
Neighborhood span1 391 269-1 391 889 nt621 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 391 269 nt1 391 889 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT89_RS11435GCF_016650935#JFT89_RS11435
RROmpRCurrent focus
1 391 269-1 391 889 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650935#JFT89_RS11435The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2085180
Simplified PFAM architecture for RROC_2085180
PFAM domain coverage: 156 / 206 aa (75.7%)
1 aa206 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[149-195]
- Domain count: 2
- Matched identifier: RROC_2085180
- Positioned domains: Response_reg 3-111 ; Trans_reg_C 149-195
Cluster members and taxonomy
Representative gene: GCF_016650935#JFT89_RS11435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key