1 CheW#1
17-149 aa · 133 aa · 44.0% of protein
Raw token
CheW:17:1.92e-39:149:134:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS05790
Response regulator CheV family
Bacillus sp. TH25 · GCF_016650935
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016650935#JFT89_RS05790Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-298 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:176:3.66e-18:298:124:111- Raw architecture: CheW:17:1.92e-39:149:134:138#Response_reg:176:3.66e-18:298:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016650935::NZ_JAEKEU010000009.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span252299-253207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_05790RefSeq proteinWP_002064638.1
Context group ID
GCF_016650935::NZ_JAEKEU010000009.1::G00014Context members
JFT89_RS05790
Partner locus tags
JFT89_RS05790
Partner old locus tags
JFT89_05790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002064638.1Primary protein accession used for annex mappings.
UniProt accessionA9VNG4Primary UniProt accession resolved in the annex database.
UniProt IDA9VNG4_BACMKDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS05790Primary locus identifier stored in the genes table.
Old locus tagJFT89_05790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000009.1Sequence record reported by the local genomic context database.
Genomic interval252 299-253 207 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span252 299-253 207 ntGCF_016650935::NZ_JAEKEU010000009.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000009.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000009.1All displayed genes belong to this local TCS context.
Neighborhood span252 299-253 207 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 299 nt253 207 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT89_RS05790GCF_016650935#JFT89_RS05790
RRCheVCurrent focus
252 299-253 207 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS08210Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568519
Simplified PFAM architecture for RROC_0568519
PFAM domain coverage: 252 / 302 aa (83.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-149] | Response_reg[176-295]
- Domain count: 2
- Matched identifier: RROC_0568519
- Positioned domains: CheW 18-149 ; CheW 18-149 ; Response_reg 176-295 ; Response_reg 176-295
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS08210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key