1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.0000000000013:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS04920
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS04920Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 355 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.000000000000785:191:62:643 HATPase_c#3
242-350 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:242:1.75e-21:350:110:109- Raw architecture: HAMP:50:0.0000000000013:119:70:69#HisKA:130:0.000000000000785:191:62:64#HATPase_c:242:1.75e-21:350:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000009.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80620-82375Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_04920RefSeq proteinWP_002168647.1
Context group ID
GCF_016650935::NZ_JAEKEU010000009.1::G00011Context members
JFT89_RS04920JFT89_RS04925
Partner locus tags
JFT89_RS04920JFT89_RS04925
Partner old locus tags
JFT89_04920JFT89_04925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002168647.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9R011Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9R011_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS04920Primary locus identifier stored in the genes table.
Old locus tagJFT89_04920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000009.1Sequence record reported by the local genomic context database.
Genomic interval80 620-81 687 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 620-82 375 ntGCF_016650935::NZ_JAEKEU010000009.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000009.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000009.1All displayed genes belong to this local TCS context.
Neighborhood span80 620-82 375 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 620 nt82 375 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS04920GCF_016650935#JFT89_RS04920
HKClassicCurrent focus
80 620-81 687 nt · Reverse (-)
JFT89_RS04925GCF_016650935#JFT89_RS04925
RROmpR
81 677-82 375 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS08490Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775048
Simplified PFAM architecture for HKOC_2775048
PFAM domain coverage: 221 / 355 aa (62.3%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-192] | HATPase_c[247-351]
- Domain count: 3
- Matched identifier: HKOC_2775048
- Positioned domains: HAMP 67-119 ; HisKA 130-192 ; HATPase_c 247-351
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS08490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key