1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:1.12e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS04110
Response regulator OmpR family
Bacillus sp. TH25 · GCF_016650935
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS04110Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 228 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.5% of protein
Raw token
Trans_reg_C:151:5.29e-29:224:77:77- Raw architecture: Response_reg:5:1.12e-36:114:111:111#Trans_reg_C:151:5.29e-29:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000008.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216995-219462Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_04110RefSeq proteinWP_201039481.1
Context group ID
GCF_016650935::NZ_JAEKEU010000008.1::G00010Context members
JFT89_RS04110JFT89_RS04115
Partner locus tags
JFT89_RS04110JFT89_RS04115
Partner old locus tags
JFT89_04110JFT89_04115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201039481.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS04110Primary locus identifier stored in the genes table.
Old locus tagJFT89_04110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000008.1Sequence record reported by the local genomic context database.
Genomic interval216 995-217 681 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span216 995-219 462 ntGCF_016650935::NZ_JAEKEU010000008.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000008.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000008.1All displayed genes belong to this local TCS context.
Neighborhood span216 995-219 462 nt2 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 995 nt219 462 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS04110GCF_016650935#JFT89_RS04110
RROmpRCurrent focus
216 995-217 681 nt · Forward (+)
JFT89_RS04115GCF_016650935#JFT89_RS04115
HKClassic
217 678-219 462 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650935#JFT89_RS04110The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1324559
Simplified PFAM architecture for RROC_1324559
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1324559
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_016650935#JFT89_RS04110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key