1 Response_reg#1
3-113 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:3:2.2e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS03975
Response regulator OmpR family
Bacillus sp. TH25 · GCF_016650935
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS03975Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:7.13e-31:220:77:77- Raw architecture: Response_reg:3:2.2e-39:113:111:111#Trans_reg_C:145:7.13e-31:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000008.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191563-193607Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_03975RefSeq proteinWP_002128055.1
Context group ID
GCF_016650935::NZ_JAEKEU010000008.1::G00009Context members
JFT89_RS03970JFT89_RS03975
Partner locus tags
JFT89_RS03970JFT89_RS03975
Partner old locus tags
JFT89_03970JFT89_03975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128055.1Primary protein accession used for annex mappings.
UniProt accessionR8HX23Primary UniProt accession resolved in the annex database.
UniProt IDR8HX23_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS03975Primary locus identifier stored in the genes table.
Old locus tagJFT89_03975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000008.1Sequence record reported by the local genomic context database.
Genomic interval192 933-193 607 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span191 563-193 607 ntGCF_016650935::NZ_JAEKEU010000008.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000008.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000008.1All displayed genes belong to this local TCS context.
Neighborhood span191 563-193 607 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 563 nt193 607 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS03970GCF_016650935#JFT89_RS03970
HKClassic
191 563-192 936 nt · Reverse (-)
JFT89_RS03975GCF_016650935#JFT89_RS03975
RROmpRCurrent focus
192 933-193 607 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS14060Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528474
Simplified PFAM architecture for RROC_1528474
PFAM domain coverage: 186 / 224 aa (83.0%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1528474
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS14060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key