1 HAMP#1
200-263 aa · 64 aa · 12.8% of protein
Raw token
HAMP:200:0.0000000000311:263:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS01870
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS01870Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 501 aa (47.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
276-343 aa · 68 aa · 13.6% of protein
Raw token
HisKA:276:6.75e-16:343:68:643 HATPase_c#3
390-497 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:390:1.11e-22:497:109:109- Raw architecture: HAMP:200:0.0000000000311:263:64:69#HisKA:276:6.75e-16:343:68:64#HATPase_c:390:1.11e-22:497:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000005.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5044-7234Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_01870RefSeq proteinWP_016095244.1
Context group ID
GCF_016650935::NZ_JAEKEU010000005.1::G00005Context members
JFT89_RS01870JFT89_RS01875
Partner locus tags
JFT89_RS01870JFT89_RS01875
Partner old locus tags
JFT89_01870JFT89_01875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016095244.1Primary protein accession used for annex mappings.
UniProt accessionR8CC83Primary UniProt accession resolved in the annex database.
UniProt IDR8CC83_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS01870Primary locus identifier stored in the genes table.
Old locus tagJFT89_01870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000005.1Sequence record reported by the local genomic context database.
Genomic interval5 044-6 549 nt1 506 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 044-7 234 ntGCF_016650935::NZ_JAEKEU010000005.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000005.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000005.1All displayed genes belong to this local TCS context.
Neighborhood span5 044-7 234 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 044 nt7 234 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS01870GCF_016650935#JFT89_RS01870
HKClassicCurrent focus
5 044-6 549 nt · Reverse (-)
JFT89_RS01875GCF_016650935#JFT89_RS01875
RROmpR
6 533-7 234 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS11290Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468461
Simplified PFAM architecture for HKOC_1468461
PFAM domain coverage: 219 / 501 aa (43.7%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[220-263] | HisKA[276-342] | HATPase_c[390-497]
- Domain count: 3
- Matched identifier: HKOC_1468461
- Positioned domains: HAMP 220-263 ; HisKA 276-342 ; HATPase_c 390-497
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS11290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key