1 HAMP#1
51-129 aa · 79 aa · 22.1% of protein
Raw token
HAMP:51:0.00000000659:129:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS01650
Histidine kinase, Classic
Bacillus sp. TH25 · GCF_016650935
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS01650Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 357 aa (71.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.8% of protein
Raw token
HisKA:133:0.0000000000000446:199:67:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:2.32e-32:352:110:109- Raw architecture: HAMP:51:0.00000000659:129:79:69#HisKA:133:0.0000000000000446:199:67:64#HATPase_c:243:2.32e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span301691-303438Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_01650RefSeq proteinWP_016094245.1
Context group ID
GCF_016650935::NZ_JAEKEU010000002.1::G00003Context members
JFT89_RS01650JFT89_RS01655
Partner locus tags
JFT89_RS01650JFT89_RS01655
Partner old locus tags
JFT89_01650JFT89_01655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016094245.1Primary protein accession used for annex mappings.
UniProt accessionR8DF76Primary UniProt accession resolved in the annex database.
UniProt IDR8DF76_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS01650Primary locus identifier stored in the genes table.
Old locus tagJFT89_01650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000002.1Sequence record reported by the local genomic context database.
Genomic interval301 691-302 764 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span301 691-303 438 ntGCF_016650935::NZ_JAEKEU010000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000002.1All displayed genes belong to this local TCS context.
Neighborhood span301 691-303 438 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
301 691 nt303 438 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS01650GCF_016650935#JFT89_RS01650
HKClassicCurrent focus
301 691-302 764 nt · Reverse (-)
JFT89_RS01655GCF_016650935#JFT89_RS01655
RROmpR
302 761-303 438 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042790735#ACFRAW_RS11115Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2717486
Simplified PFAM architecture for HKOC_2717486
PFAM domain coverage: 176 / 366 aa (48.1%)
1 aa366 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2717486
- Positioned domains: HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_042790735#ACFRAW_RS11115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key