1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:3.45e-19:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU20_RS10390
Response regulator, unclassified
Bacillus sp. TH30 · GCF_016650875
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016650875#JFU20_RS10390Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 225 aa (50.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.45e-19:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016650875::NZ_JAEKEY010000002.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1589969-1590646Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU20_10390RefSeq proteinWP_002166265.1
Context group ID
GCF_016650875::NZ_JAEKEY010000002.1::G00029Context members
JFU20_RS10390
Partner locus tags
JFU20_RS10390
Partner old locus tags
JFU20_10390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002166265.1Primary protein accession used for annex mappings.
UniProt accessionJ8EF32Primary UniProt accession resolved in the annex database.
UniProt IDJ8EF32_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU20_RS10390Primary locus identifier stored in the genes table.
Old locus tagJFU20_10390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEY010000002.1Sequence record reported by the local genomic context database.
Genomic interval1 589 969-1 590 646 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 589 969-1 590 646 ntGCF_016650875::NZ_JAEKEY010000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650875::NZ_JAEKEY010000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span1 589 969-1 590 646 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 589 969 nt1 590 646 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFU20_RS10390GCF_016650875#JFU20_RS10390
RRunclassifiedCurrent focus
1 589 969-1 590 646 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290915#IIG_RS19280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1464709
Simplified PFAM architecture for RROC_1464709
PFAM domain coverage: 177 / 225 aa (78.7%)
1 aa225 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[4-115] | HTH_64[158-222]
- Domain count: 2
- Matched identifier: RROC_1464709
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_64 158-222 ; HTH_64 158-222
Cluster members and taxonomy
Representative gene: GCF_000290915#IIG_RS19280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 395 · GCF_016650875
AssemblyASM1665087v1 · Contighaploid
Genome composition5 897 091 bp · 35,5% GCBacillus sp. TH30
Signal transduction countsGenes 124 · HK 65 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key