1 HAMP#1
39-109 aa · 71 aa · 20.2% of protein
Raw token
HAMP:39:0.00000000205:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU20_RS10185
Histidine kinase, Classic
Bacillus sp. TH30 · GCF_016650875
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016650875#JFU20_RS10185Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 352 aa (71.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 19.3% of protein
Raw token
HisKA:120:6.83e-18:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 31.5% of protein
Raw token
HATPase_c:238:7.77e-26:348:111:109- Raw architecture: HAMP:39:0.00000000205:109:71:69#HisKA:120:6.83e-18:187:68:64#HATPase_c:238:7.77e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016650875::NZ_JAEKEY010000002.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1554657-1555715Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU20_10185RefSeq proteinWP_002201526.1
Context group ID
GCF_016650875::NZ_JAEKEY010000002.1::G00028Context members
JFU20_RS10185
Partner locus tags
JFU20_RS10185
Partner old locus tags
JFU20_10185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002201526.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8BTM7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8BTM7_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU20_RS10185Primary locus identifier stored in the genes table.
Old locus tagJFU20_10185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEY010000002.1Sequence record reported by the local genomic context database.
Genomic interval1 554 657-1 555 715 nt1 059 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 554 657-1 555 715 ntGCF_016650875::NZ_JAEKEY010000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650875::NZ_JAEKEY010000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span1 554 657-1 555 715 nt1 059 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 554 657 nt1 555 715 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFU20_RS10185GCF_016650875#JFU20_RS10185
HKClassicCurrent focus
1 554 657-1 555 715 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291295#IEE_RS21000Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2788807
Simplified PFAM architecture for HKOC_2788807
PFAM domain coverage: 231 / 352 aa (65.6%)
1 aa352 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[57-109] | HisKA[120-186] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2788807
- Positioned domains: HAMP 57-109 ; HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_000291295#IEE_RS21000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 395 · GCF_016650875
AssemblyASM1665087v1 · Contighaploid
Genome composition5 897 091 bp · 35,5% GCBacillus sp. TH30
Signal transduction countsGenes 124 · HK 65 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key