1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:1.97e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU20_RS00265
Response regulator OmpR family
Bacillus sp. TH30 · GCF_016650875
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650875#JFU20_RS00265Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 237 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 31.2% of protein
Raw token
Trans_reg_C:156:1.37e-31:229:74:77- Raw architecture: Response_reg:5:1.97e-41:114:111:111#Trans_reg_C:156:1.37e-31:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650875::NZ_JAEKEY010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56587-58376Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU20_00265RefSeq proteinWP_061675673.1
Context group ID
GCF_016650875::NZ_JAEKEY010000001.1::G00001Context members
JFU20_RS00265JFU20_RS00270
Partner locus tags
JFU20_RS00265JFU20_RS00270
Partner old locus tags
JFU20_00265JFU20_00270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_061675673.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU20_RS00265Primary locus identifier stored in the genes table.
Old locus tagJFU20_00265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEY010000001.1Sequence record reported by the local genomic context database.
Genomic interval56 587-57 300 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 587-58 376 ntGCF_016650875::NZ_JAEKEY010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650875::NZ_JAEKEY010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span56 587-58 376 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 587 nt58 376 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU20_RS00265GCF_016650875#JFU20_RS00265
RROmpRCurrent focus
56 587-57 300 nt · Forward (+)
JFU20_RS00270GCF_016650875#JFU20_RS00270
HKClassic
57 297-58 376 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650875#JFU20_RS00265The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0973555
Simplified PFAM architecture for RROC_0973555
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0973555
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_016650875#JFU20_RS00265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 395 · GCF_016650875
AssemblyASM1665087v1 · Contighaploid
Genome composition5 897 091 bp · 35,5% GCBacillus sp. TH30
Signal transduction countsGenes 124 · HK 65 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key