1 HAMP#1
56-125 aa · 70 aa · 19.6% of protein
Raw token
HAMP:56:0.00000000855:125:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU35_RS00885
Histidine kinase, Classic
Bacillus sp. TH45 · GCF_016650615
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650615#JFU35_RS00885Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 358 aa (66.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-205 aa · 69 aa · 19.3% of protein
Raw token
HisKA:137:0.000000000000577:205:69:643 HATPase_c#3
249-347 aa · 99 aa · 27.7% of protein
Raw token
HATPase_c:249:1.2e-16:347:99:109- Raw architecture: HAMP:56:0.00000000855:125:70:69#HisKA:137:0.000000000000577:205:69:64#HATPase_c:249:1.2e-16:347:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650615::NZ_JAEKFK010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170553-172312Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU35_00885RefSeq proteinWP_201062818.1
Context group ID
GCF_016650615::NZ_JAEKFK010000001.1::G00002Context members
JFU35_RS00880JFU35_RS00885
Partner locus tags
JFU35_RS00880JFU35_RS00885
Partner old locus tags
JFU35_00880JFU35_00885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201062818.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU35_RS00885Primary locus identifier stored in the genes table.
Old locus tagJFU35_00885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKFK010000001.1Sequence record reported by the local genomic context database.
Genomic interval171 236-172 312 nt1 077 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span170 553-172 312 ntGCF_016650615::NZ_JAEKFK010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650615::NZ_JAEKFK010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKFK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span170 553-172 312 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 553 nt172 312 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU35_RS00880GCF_016650615#JFU35_RS00880
RROmpR
170 553-171 239 nt · Forward (+)
JFU35_RS00885GCF_016650615#JFU35_RS00885
HKClassicCurrent focus
171 236-172 312 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650615#JFU35_RS00885The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2761569
Simplified PFAM architecture for HKOC_2761569
PFAM domain coverage: 202 / 358 aa (56.4%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-124] | HisKA[137-199] | HATPase_c[250-345]
- Domain count: 3
- Matched identifier: HKOC_2761569
- Positioned domains: HAMP 82-124 ; HisKA 137-199 ; HATPase_c 250-345
Cluster members and taxonomy
Representative gene: GCF_016650615#JFU35_RS00885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 409 · GCF_016650615
AssemblyASM1665061v1 · Contighaploid
Genome composition5 862 293 bp · 35,5% GCBacillus sp. TH45
Signal transduction countsGenes 105 · HK 56 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key