1 HisKA#1
351-409 aa · 59 aa · 10.3% of protein
Raw token
HisKA:351:0.000000000473:409:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU23_RS21290
Histidine kinase, Classic
Bacillus sp. TH50 · GCF_016650565
ClassHKTypeClassicLength575 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650565#JFU23_RS21290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length575 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 575 aa (29.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa575 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
466-573 aa · 108 aa · 18.8% of protein
Raw token
HATPase_c:466:5.09e-31:573:108:109- Raw architecture: HisKA:351:0.000000000473:409:59:64#HATPase_c:466:5.09e-31:573:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650565::NZ_JAEKFM010000007.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span822376-824814Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU23_21290RefSeq proteinWP_201032663.1
Context group ID
GCF_016650565::NZ_JAEKFM010000007.1::G00046Context members
JFU23_RS21290JFU23_RS21295
Partner locus tags
JFU23_RS21290JFU23_RS21295
Partner old locus tags
JFU23_21290JFU23_21295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201032663.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU23_RS21290Primary locus identifier stored in the genes table.
Old locus tagJFU23_21290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKFM010000007.1Sequence record reported by the local genomic context database.
Genomic interval822 376-824 103 nt1 728 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span822 376-824 814 ntGCF_016650565::NZ_JAEKFM010000007.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650565::NZ_JAEKFM010000007.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKFM010000007.1All displayed genes belong to this local TCS context.
Neighborhood span822 376-824 814 nt2 439 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
822 376 nt824 814 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU23_RS21290GCF_016650565#JFU23_RS21290
HKClassicCurrent focus
822 376-824 103 nt · Reverse (-)
JFU23_RS21295GCF_016650565#JFU23_RS21295
RROmpR
824 113-824 814 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650565#JFU23_RS21290The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1190073
Simplified PFAM architecture for HKOC_1190073
PFAM domain coverage: 167 / 575 aa (29.0%)
1 aa575 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[351-409] | HATPase_c[466-573]
- Domain count: 2
- Matched identifier: HKOC_1190073
- Positioned domains: HisKA 351-409 ; HATPase_c 466-573
Cluster members and taxonomy
Representative gene: GCF_016650565#JFU23_RS21290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 414 · GCF_016650565
AssemblyASM1665056v1 · Contighaploid
Genome composition5 932 849 bp · 35,5% GCBacillus sp. TH50
Signal transduction countsGenes 112 · HK 60 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key