1 Response_reg#1
4-115 aa · 112 aa · 51.6% of protein
Raw token
Response_reg:4:2.54e-17:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU23_RS13705
Response regulator NarL family
Bacillus sp. TH50 · GCF_016650565
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650565#JFU23_RS13705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 217 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-207 aa · 58 aa · 26.7% of protein
Raw token
HTH_LUXR:150:4.87e-16:207:58:58- Raw architecture: Response_reg:4:2.54e-17:115:113:111#HTH_LUXR:150:4.87e-16:207:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650565::NZ_JAEKFM010000003.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2611219-2614193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU23_13705RefSeq proteinWP_201032099.1
Context group ID
GCF_016650565::NZ_JAEKFM010000003.1::G00027Context members
JFU23_RS13700JFU23_RS13705
Partner locus tags
JFU23_RS13700JFU23_RS13705
Partner old locus tags
JFU23_13700JFU23_13705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201032099.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU23_RS13705Primary locus identifier stored in the genes table.
Old locus tagJFU23_13705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKFM010000003.1Sequence record reported by the local genomic context database.
Genomic interval2 613 540-2 614 193 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 611 219-2 614 193 ntGCF_016650565::NZ_JAEKFM010000003.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650565::NZ_JAEKFM010000003.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKFM010000003.1All displayed genes belong to this local TCS context.
Neighborhood span2 611 219-2 614 193 nt2 975 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 611 219 nt2 614 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU23_RS13700GCF_016650565#JFU23_RS13700
HKClassic
2 611 219-2 613 534 nt · Forward (+)
JFU23_RS13705GCF_016650565#JFU23_RS13705
RRNarLCurrent focus
2 613 540-2 614 193 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650565#JFU23_RS13705The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1859851
Simplified PFAM architecture for RROC_1859851
PFAM domain coverage: 164 / 217 aa (75.6%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[153-204]
- Domain count: 2
- Matched identifier: RROC_1859851
- Positioned domains: Response_reg 4-115 ; GerE 153-204
Cluster members and taxonomy
Representative gene: GCF_016650565#JFU23_RS13705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 414 · GCF_016650565
AssemblyASM1665056v1 · Contighaploid
Genome composition5 932 849 bp · 35,5% GCBacillus sp. TH50
Signal transduction countsGenes 112 · HK 60 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key